Seqout

ClaudeCommunityby Saket Lab

Seqout lets you search, discover and access datasets from GEO, SRA, ENA, DRA, GEA, GSA & ArrayExpress. Seqout harmonises sample metadata, publication details and offers read-derived metadata such as bacterial or viral content in samples, genetic sex and species.

Details

Health Life SciencesData Analytics

Listed Sep 29, 2026

by Saket Lab

saketlab.in/

MCP endpoint: https://seqout.org/api/mcp · streamable-http

Available tools (109)

bulk_project_samples_metadataclassify_accessionconvert_accessionconvert_accessionsdownload_pentimento_detections_csvdownload_study_scriptdownload_supplementary_scriptfind_geo_series_samplesfind_publicationfind_study_experimentsfind_study_runsget_ae_experiment_samplesget_common_name_by_scientific_nameget_common_names_by_scientific_namesget_country_accessionsget_country_facetsget_country_pisget_country_pointsget_country_projectsget_country_summaryget_disease_aliasesget_disease_facetsget_disease_projectsget_disease_summaryget_enriched_columnget_enriched_coverageget_enriched_crosstabget_enriched_statsget_experimentget_experiment_enrichedget_experiment_metadata_rowsget_experiment_runsget_geo_series_samplesget_global_contribution_filtersget_global_contributionsget_growth_statsget_last_updatedget_longread_facetsget_longread_projectsget_longread_summaryget_organism_growthget_organism_totalsget_pentimento_overviewget_perturbation_facetsget_perturbation_projectsget_perturbation_summaryget_platform_filtersget_platform_growthget_platform_instrumentsget_platform_totalsget_projectget_project_citeget_project_enrichedget_project_longread_chemistryget_project_metadataget_project_metadata_rowsget_project_overlapget_project_similarget_project_single_cellget_project_single_cell_statusget_project_single_cell_summaryget_project_xrefget_runget_run_checksumsget_run_enrichedget_run_metadata_rowsget_sampleget_sample_detailget_sample_experimentsget_sc_qualityget_sc_quality_samplesget_search_investigatorsget_single_cell_overviewget_singlecell_facetsget_singlecell_projectsget_singlecell_summaryget_source_totalsget_spatial_facetsget_spatial_projectsget_spatial_summaryget_study_bamsget_study_download_manifestget_study_experimentsget_study_runsget_study_samplesget_supplementary_filesget_tissue_facetsget_tissue_microbesget_tissue_projectsget_tissue_summarylist_centerslist_instrument_modelslist_journalslist_library_strategieslist_single_cell_studiesontology_termresolve_accession_projectresolve_prj_projectresolve_submission_studiessearch_allsearch_author_projectssearch_by_authorsearch_enriched_samplessearch_expansionsearch_highlightsearch_nlsearch_organismssearch_structuredsearch_suggest

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